cljam.io.bam-index

Parser for a BAM index file.

(bam-index f)

Returns a cljam.bam-index.core.BAMIndex.

(bin-index f ref-idx)

Returns binning index for the given reference index.

(get-spans bai ref-idx beg end)

Returns regions of a BAM file that may contain an alignment for the given range.

(linear-index f ref-idx)

Returns linear index for the given reference index.

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