Alpha - subject to change. Generator of a FASTA sequence dictionary file. | (ns cljam.algo.dict
(:require [clojure.java.io :as cio]
[cljam.io.dict.core :as dict-core]
[cljam.io.fasta.core :as fa-core]
[cljam.io.sequence :as cseq])) |
Creates a FASTA sequence dictionary file (.dict) from the specified FASTA file. The unfinished file will be deleted when failing. | (defn create-dict
[fasta out-dict]
(with-open [r (cseq/fasta-reader fasta)]
(dict-core/create-dict out-dict
(fa-core/read-headers r)
(fa-core/read-sequences r)
(str (.. (cio/file fasta) getCanonicalFile toURI))))) |