Indexer of BAM. | (ns cljam.algo.bam-indexer
(:require [cljam.common :refer [*n-threads*]]
[cljam.io.sam :as sam]
[cljam.io.bam-index.core :as bai-core])) |
Creates a BAM index file from the BAM file. | (defn create-index
[in-bam out-bai & {:keys [n-threads] :or {n-threads 0}}]
(with-open [r (sam/bam-reader in-bam)]
(binding [*n-threads* n-threads]
(bai-core/create-index out-bai (sam/read-blocks r) (sam/read-refs r))))) |